Get specified metadata columns from a Seurat object

Usage

metadata_get_colnames(srt, pattern = "RNA_snn_res")

Arguments

srt: Seurat object.
pattern: Pattern to match in column names, default is "RNA_snn_res".

Value

A character vector of column names that match the pattern.

Examples

library(Seurat)
#> Loading required package: SeuratObject
#> Loading required package: sp
#> ‘SeuratObject’ was built under R 4.5.0 but the current version is
#> 4.5.2; it is recomended that you reinstall ‘SeuratObject’ as the ABI
#> for R may have changed
#> 
#> Attaching package: ‘SeuratObject’
#> The following objects are masked from ‘package:base’:
#> 
#>     intersect, t
# Create a dummy Seurat object with clustering columns
srt <- SeuratObject::pbmc_small
srt$RNA_snn_res.0.8 <- Idents(srt)
metadata_get_colnames(srt)
#> [1] "RNA_snn_res.0.8" "RNA_snn_res.1"