Map Gene Symbols Using Bioconductor Packages

Usage

map_gene_to_chrbp_using_TxDb(
  genes,
  gene_col = NULL,
  genome = c("hg19", "hg38")
)

Arguments

genes

A character vector of gene symbols or a data frame containing gene symbols.

gene_col

The column name of gene symbols if genes is a data frame.

genome

The genome assembly to use: "hg19" or "hg38".

For hg19, it needs "TxDb.Hsapiens.UCSC.hg19.knownGene" Bioconductor package
For hg38, it needs "TxDb.Hsapiens.UCSC.hg38.knownGene" Bioconductor package

Value

A data frame with mapped results.

Examples

if (FALSE) { # \dontrun{
gene_symbols <- c("TP53", "BRCA1", "EGFR") # Example with gene symbol vector
map_gene_to_chrbp_using_TxDb(genes = gene_symbols, genome = "hg19")

gene_symbols_df <- data.frame(GeneName = gene_symbols,
                            OtherInformation = c(1,2,3)) # Example with data frame input
map_gene_to_chrbp_using_TxDb(genes = gene_symbols_df,
                             gene_col = "GeneName",
                             genome = "hg19")
} # }