Map Ensembl Gene IDs to TSS Using biomaRt — map_ensg_to_tss_using

This function maps Ensembl gene IDs to their transcription start sites (TSS). (Note that this is inferred using the gene start and end information based on strand) It uses biomaRt for the specified genome assembly ("hg19" or "hg38").

Usage

map_ensg_to_tss_using_biomaRt(
  ensembl_ids,
  ensembl_col = NULL,
  genome = c("hg19", "hg38"),
  ...
)

Arguments

ensembl_ids: A character vector of Ensembl gene IDs, or a data frame containing this information.
ensembl_col: If ensembl_ids is a data frame, specify the column name containing the Ensembl gene IDs.
genome: The genome version to use: "hg19" or "hg38".
...: pass to map_ensg_to_chrbp_using_biomaRt. See map_ensg_to_chrbp_using_biomaRt()

Value

A data frame with Ensembl gene IDs and their TSS positions.

Examples

if (FALSE) { # \dontrun{
ensembl_ids <- c("ENSG00000141510", "ENSG00000012048", "ENSG00000146648")
map_ensg_to_tss_using_biomaRt(ensembl_ids = ensembl_ids, genome = "hg19")

ensembl_ids_df <- data.frame(EnsemblID = ensembl_ids, OtherInfo = c(1, 2, 3))
map_ensg_to_tss_using_biomaRt(ensembl_ids = ensembl_ids_df,
                              ensembl_col = "EnsemblID",
                              genome = "hg38")
} # }